Instructions

The Toolbox requires that MATLAB is already installed on your computer. (Basic MATLAB skills are required in order to be able to correctly use the program)
The
COBRA Toolbox is also needed to be installed

Installation:

· Download the .zip-file and unzip it in your folder of choice (for example, C:\Program Files\MATLAB\SCAN-Toolbox)

· Start MATLAB

Use “Set Path” and click on “Add with Subfolders” to choose path of the SCAN-Toolbox. Next, click on Save and close the window. This procedure will be set a global MATLAB path to the SCAN-Toolbox folder. It enables you to access the toolbox from arbitrary locations on your disk.

Test the SCAN toolbox:

· Open “example” folder and use “test_SCAN” in order to test all available functions based-on SBML example files located in this folder. If it passed with no error, it is ready to use.

· If there is any error, please feel free to contact one of the Authors.  It demonstrates the process of model building.

SCAN is a MATLAB Toolbox which uses SBML files in COBRA structure format as input and builds different Metabolite-centric and Enzyme-centric Networks which are needed for pre– and post-process of structural analysis softwares such as Cytoscape.

Complete list of SCAN Toolbox could be found Here

SCAN Toolbox

Structural Cobra Add-oN for metabolic metworks

Current Version : 2.0

 

Download

 

Documentation