 degree_dist | Counts Metabolite and Enzyme degree distribution over networks |
| enz_cent | Builds Binary Stoichiometric Matrix and Enzyme-Enzyme Networks considering Currency Metabolites |
| enz_cent_Lib | Builds Undirected Enzyme-Enzyme Network with Removing Currency Metabolites (based-on a Library file) |
| enz_cent_Lib_dir | Builds Directed Enzyme-Enzyme Network with Removing Currency Metabolites (based-on a Library file) |
| enz_cent_Lib_dir_kavosh | Builds Directed Enzyme-Enzyme Network with Removing Currency Metabolites (based-on a Library file) which could be used as an input for Kavosh Algorithm. |
| enz_cent_Lib_dir_quatexelero | Builds Directed Enzyme-Enzyme Network with Removing Currency Metabolites (based-on a Library file) which could be used as an input for QuateXelero Algorithm. |
| enz_cent_Lib_dir_single_node | Builds Directed Enzyme-Enzyme Network with Removing Currency Metabolites (based-on a Library file) and considering single nodes (without any edges) |
| enz_cent_Lib_single_node | Builds Undirected Enzyme-Enzyme Network with Removing Currency Metabolites (based-on a Library file) and considering single nodes (without any edges) |
| enz_cent_RCM | Builds Binary Stoichiometric Matrix and Enzyme-Enzyme Networks Removing Currency Metabolites |
| enz_cent_RCMLib | Builds Binary Stoichiometric Matrix and Enzyme-Enzyme Networks Removing Currency Metabolites (based-on a Library file) |
| enz_cent_RCMLib_dir | Builds Directed Enzyme-Enzyme Networks Removing Currency Metabolites (based-on a Library file) |
| enz_cent_RCMLib_dir_kavosh | Builds Directed Enzyme-Enzyme Networks Removing Currency Metabolites (based-on a Library file), which could be used as an input for Kavosh Algorithm. |
| enz_cent_RCMLib_dir_quatexelero | Builds Directed Enzyme-Enzyme Networks Removing Currency Metabolites (based-on a Library file), which could be used as an input for QuateXelero Algorithm. |
| enz_cent_RCMLib_dir_single_node | Builds Directed Enzyme-Enzyme Networks Removing Currency Metabolites (based-on a Library file) and considering single nodes (without any edges) |
| enz_cent_RCMLib_single_node | Builds Directed Enzyme-Enzyme Networks Removing Currency Metabolites (based-on a Library file) and considering single nodes (without any edges) |
| enz_cent_RCM_dir | Builds Directed Enzyme-Enzyme Networks Removing Currency Metabolites |
| enz_cent_RCM_dir_kavosh | Builds Directed Enzyme-Enzyme Networks Removing Currency Metabolites which could be used as an input for Kavosh Algorithm. |
| enz_cent_RCM_dir_quatexelero | Builds Directed Enzyme-Enzyme Networks Removing Currency Metabolites which could be used as an input for QuateXelero Algorithm. |
| enz_cent_RCM_dir_single_node | Builds Directed Enzyme-Enzyme Networks Removing Currency Metabolites and considering single nodes (without any edges) |
| enz_cent_RCM_single_node | Builds Directed Enzyme-Enzyme Networks Removing Currency Metabolites and considering single nodes (without any edges) |
| enz_cent_dir | Builds Directed Enzyme-Enzyme Networks considering Currency Metabolites |
| enz_cent_dir_kavosh | Builds Directed Enzyme-Enzyme Networks considering Currency Metabolites which could be used as an input for Kavosh Algorithm. |
| enz_cent_dir_quatexelero | Builds Directed Enzyme-Enzyme Networks considering Currency Metabolites which could be used as an input for QuateXelero Algorithm. |
| enz_cent_dir_single_node | Builds Directed Enzyme-Enzyme Networks considering Currency Metabolites and single nodes (without any edges) |
| enz_cent_single_node | Builds Binary Stoichiometric Matrix and Enzyme-Enzyme Networks considering Currency Metabolites and single nodes (without any edges) |
| enz_comp | reads two Metabolic Network SBML files, compares them and finds Enzymes which are not in common |
| met_cent | Builds Binary Stoichiometric Matrix and Undirected Metabolite-Metabolite Networks |
| met_cent_dir | Builds Directed Metabolite-Metabolite Networks |
| met_cent_dir_kavosh | Builds Directed Enzyme-Enzyme Networks which could be used as an input for Kavosh Algorithm. |
| met_cent_dir_quatexelero | Builds Directed Enzyme-Enzyme Networks which could be used as an input for QuateXelero Algorithm. |
| met_cent_dir_single_node | Builds Directed Metabolite-Metabolite Networks considering single nodes (without any edges) |
| met_cent_single_node | Builds Undirected Metabolite-Metabolite Networks considering single nodes (without any edges) |
| met_comp | reads two Metabolic Network SBML files, compares them and finds Metabolites which are not in common |
| met_dist | Counts total occurance of each metabolite through the network and total number of metabolites per reaction |
| postprocess_CytoHubba | Reads an output of the CytoHubba and construct a new output file which has been added the name of the related SBML metabolites or reactions |
| postprocess_CytoHubba_list | Reads a list of CytoHubba outputs and construct new outputs which have been added the name of the related SBML metabolites or reactions |
| postprocess_MCODE | Reads an output of the MCODE and construct a new output file which has been added the name of the related SBML metabolites or reactions |
| postprocess_NeMo | Reads an output of the NeMo and construct a new output file which has been added the name of the related SBML metabolites or reactions |
Master index